A few modules show up twice when running dotCover from the command line

I integrated dotCover into our CI build. I did so using the command line runner with an xml file as input. The results show two assemblies twice. Each duplication shows different results e.g.

• Common 6%
• HardwareManager 9%
• HardwareManager 73%
• Common 81%

When running coverage within Visual Studio the results are the same for all components. The only problem is that the two duplicates with a low coverage shouldn't be there.

I checked if the run includes duplicate dll's but it doesn't. Each dll specified as argument to vstest.console.exe is unique.

I also filter out certain assemblies because their code coverage target is 0%. It might have something to do with the filters but I can't see what it could be. I pasted the filter definition below just in case.

I cannot think of any other reason why these results are displayed differently so I hope someone here can help.

<ExcludeFilters>
<FilterEntry>
<ClassMask>Chart.*</ClassMask>
</FilterEntry>
<FilterEntry>
<ClassMask>DataStorage.*</ClassMask>
</FilterEntry>
<FilterEntry>
<ClassMask>DataModel.*</ClassMask>
</FilterEntry>
<FilterEntry>
<ClassMask>Common.UI.*</ClassMask>
</FilterEntry>
<FilterEntry>
<ModuleMask>MahApps.Metro</ModuleMask>
</FilterEntry>
<FilterEntry>
<ModuleMask>FluentCommandLineParser</ModuleMask>
</FilterEntry>
<FilterEntry>
<ModuleMask>*.Test</ModuleMask>
</FilterEntry>
<FilterEntry>
<ModuleMask>TestHelpers</ModuleMask>
</FilterEntry>
<FilterEntry>
<ModuleMask>OcrHelper</ModuleMask>
</FilterEntry>
</ExcludeFilters>